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About Access Restrictions to Electronic Resources

Access and use of electronic resources made available by the Becker Medical Library are governed by license agreements between the School of Medicine and publishers or third parties. Several of the electronic resources carry some restriction on their use. Access may be restricted by user location, number of concurrent users, and/or password.

In short, most people experience access limitations based on the network to which their computer is connected. Below is a quick breakdown of what can be accessed from various networks.

BJH (Limited to) SLCH (Limited to) Proxy (Remote Access) WUSM Off Campus
AccessMedicine
STAT!Ref
UpToDate Online
AccessMedicine
American Academy of Pediatrics Journals
Applied Clinical Informatics
Harriet Lane Handbook
Red Book Online
ScienceDirect
STAT!Ref
UpToDate Online
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Partek Next Generation Sequencing Data Analysis Training

Partek will be providing a one day in-depth training course of the Partek GS software package in Room 601B, Bernard Becker Medical Library on October 29th from 9:30am to 4pm.

Course Description:
The class will focus on analyzing next generation sequencing data in Partek GS. The RNA-seq session will cover how to use statistical tests to identify differentially expressed transcripts and alternative spliced genes, novel exons/transcripts and coding SNPs. The ChIP-seq session will specifically focus on visualization of mapped reads, peak detection, motif discovery (find both novel motif and known motif), annotate enriched regions with overlapping genes or database.

Course Objectives:
The topics to be covered:

  • Statistic analysis to identify differentially expressed transcripts and alternatively spliced genes
  • Data visualization in genome browser (aligned reads, peak, refseq genes, cytoband, color coded tracks of transcripts)
  • Identification and visualization of possible novel exons / transcripts
  • Peak detection and motif discovery in ChIP-seq
  • Find overlapping genes with enriched regions

* It will include time for you to analyze your own genomic data, so bring your data and the necessary sample information with you!

If you are interested in attending this workshop, please fill out the online registration form.

For more information about Partek GS, visit their website: http://www.partek.com/ 

* Please note: Becker Briefs pages may contain links, email addresses or information about resources which are no longer current.