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About Access Restrictions to Electronic Resources

Access and use of electronic resources made available by the Becker Medical Library are governed by license agreements between the School of Medicine and publishers or third parties. Several of the electronic resources carry some restriction on their use. Access may be restricted by user location, number of concurrent users, and/or password.

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AccessMedicine
STAT!Ref
UpToDate Online
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American Academy of Pediatrics Journals
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Harriet Lane Handbook
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Partek Flow hands-on RNA-Seq data analysis training at WUSM - August 9, 2016

A Field Application Scientist from Partek will be at WUSM on August 9, 2016 to lead a full day workshop that will provide hands-on training on RNA-Seq data analysis in Partek Flow.

The workshop agenda includes:

Morning Session (9:30am – 12:00pm):

  • Import data (fastq, bam, text format) and Perform QA/AC (Pre-alignment QA/AC, Post-alignment QA/QC). Then Trim bases, Align reads and perform Gene/transcript abundance estimate (E/M)
  • Differential expression detection (GSA, ANOVA), Filter gene list and GO Enrichment Analysis
  • Visualization: Quality score distribution, Base composition, PCA scatterplot, Dotplot, Volcano plot, Hierarchical clustering, Chromosome view

Afternoon Session (1:00pm – 3:30pm):

This session starts with integration of RNA-Seq and Gene Expression Microarray data in Partek Flow and ends with a Q&A session. The Q&A portion is open to researchers to who want to discuss questions about the practice data used during the workshop or their own data (feel free to bring your data for Q &A).

Registration is required, to register, please complete the online registration form.

Questions? Contact Maze Ndonwi at ndonwimaze@wustl.edu or 314 362 4737.

* Please note: Becker Briefs pages may contain links, email addresses or information about resources which are no longer current.