Bulk RNA-Seq Data Analysis in Partek Flow

This workshop focuses on bulk RNA-seq data analysis using Partek software. 

Location: Farrell Learning and Teaching Center - FLTC Room 404

Date: Wednesday, May 22, 2019

Time: 9:30 - 12

Agenda: Import data from .fastq files, perform QA/QC (Pre-alignment QA/QC, Post-alignment QA/QC), trim bases, align reads to reference genome, quantify gene/transcript abundance, normalize gene counts, detect differentially expressed genes, filter a gene list, identify enriched KEGG pathway and/or GO terms. Data visualization will include heat maps, volcano plots, PCA scatterplot, pot plots, hierarchical clustering, chromosome view and more.