Event Details
April 5th, 2018 9:30 AM - 12:00 PM
Farrell Learning and Teaching Center
Room 303
United States

A scientist from Partek will lead a hands-on Single Cell RNA-Seq data analysis workshop on Thursday, April 5th from 9:30 am - 12:00 pm in Farrell Learning and Teacher Center, Room 303. This training uses the point-and-click interface in Partek Flow and no prior bioinformatics experience is required.


Please bring a laptop to use during this hands-on workshop. 



Topics to be covered include:


  • Filter cells using interactive QA/QC charts
  • Filter and normalize single cell RNA-seq data
  • Visualize cell populations using the interactive 3D t-SNE plot
  • Overlay gene expression and pathway signatures on the 3D t-SNE plot
  • Select and classify cells on the 3D t-SNE plot
  • Detect differentially expressed genes
  • Filter a gene list
  • Identify enriched GO terms
  • Visualize cell-level results using heat maps, volcano plots, and violin plots


Registration is required. Click the Register Now button on the right to register. Questions? Email Maze Ndonwi at Becker Library