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Event Details
September 22nd, 2011 9:30 AM - 4:00 PM
Farrell Learning and Teaching Center (214)
Room 214 A&B
United States
The class will cover the alignment using Partek Flow, BAM file import in Partek Genomic Suite, detection of the differential expression at gene level and transript level, the altevernative splicing and single nuclotide variations.

Additional topics to be covered:

  • Statistic analysis by log likelyhood ratio test to identify differentially expressed transcripts and alternatively spliced genes,
  • Data visualization in genome browser (aligned reads, peak, refseq genes, cytoband, color coded tracks of transcripts),
  • Finding overlapping genes with enriched regions,
  • Identification and visualization of possible novel exons / transcripts.