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Partek Flow Workshop - RNA-seq Analysis in Park Flow

Event Details
April 3rd, 2018 9:30 AM - 12:00 PM
Farrell Learning and Teaching Center
Room 303
United States

A scientist from Partek will lead a hands-on RNA-Seq data analysis workshop on Tuesday, April 3rd from 9:30 am - 12:00 pm in Farrell Learning and Teacher Center, Room 303. This training uses the point-and-click interface in Partek Flow and no prior bioinformatics experience is required.


Please bring a laptop to use during this hands-on workshop. 


Topics to be covered include:

  • NGS data import (fastq, bam, txt)
  • Perform QA/QC (Pre-alignment QA/QC, Post-alignment QA/QC)
  • Trim bases, Align reads to reference genome
  • Quantify gene/transcript abundance
  • Normalize gene counts, Detect differentially expressed genes
  • Filter a gene list, Identify enriched GO terms
  • Visualize results using PCA, heat maps, dot plots, chromosome view, volcano plots, and more


Registration is required. Click the Register Now button on the right to register. Questions? Email Maze Ndonwi at Becker Library