Determining your location... | View access restrictions

About Access Restrictions to Electronic Resources

Access and use of electronic resources made available by the Becker Medical Library are governed by license agreements between the School of Medicine and publishers or third parties. Several of the electronic resources carry some restriction on their use. Access may be restricted by user location, number of concurrent users, and/or password.

In short, most people experience access limitations based on the network to which their computer is connected. Below is a quick breakdown of what can be accessed from various networks.

BJH (Limited to) SLCH (Limited to) Proxy (Remote Access) WUSM Off Campus
UpToDate Online
American Academy of Pediatrics Journals
Applied Clinical Informatics
Harriet Lane Handbook
Red Book Online
UpToDate Online
Unrestricted Access to All Becker Resources Unrestricted Access to All Becker Resources No Access without Proxy

Partek Flow Workshop - Single Cell RNA-Seq Analysis

Event Details
April 5th, 2018 9:30 AM - 12:00 PM
Farrell Learning and Teaching Center
Room 303
United States

A scientist from Partek will lead a hands-on Single Cell RNA-Seq data analysis workshop on Thursday, April 5th from 9:30 am - 12:00 pm in Farrell Learning and Teacher Center, Room 303. This training uses the point-and-click interface in Partek Flow and no prior bioinformatics experience is required.


Please bring a laptop to use during this hands-on workshop. 



Topics to be covered include:


  • Filter cells using interactive QA/QC charts
  • Filter and normalize single cell RNA-seq data
  • Visualize cell populations using the interactive 3D t-SNE plot
  • Overlay gene expression and pathway signatures on the 3D t-SNE plot
  • Select and classify cells on the 3D t-SNE plot
  • Detect differentially expressed genes
  • Filter a gene list
  • Identify enriched GO terms
  • Visualize cell-level results using heat maps, volcano plots, and violin plots


Registration is required. Click the Register Now button on the right to register. Questions? Email Maze Ndonwi at Becker Library